- Americans United for Separation of Church and State (3)
- Freedom From Religion Foundation@
- International Society for Islamic Secularization (ISIS)
 - Promotes the complete separation of mosque and state. - Academic Political Science Papers on Church-State Issues
- Examining religious liberty, the separation of church and state, the establishment clause, school prayer and other issues.
- Interfaith Working Group@
- Interfaith Working Group Online: Religious Diversity and Social Issues
- Web resources related to gay rights, reproductive freedom, separation of church and state, and the diversity of religious opinion.
- Religion vs Morality
- Examines the dangers of the religious right's, and religious left's, influence on the American political system.
- Jefferson 21st Century Institute
- Dedicated to the separation of religion and government.
- Religion in Politics (ISRP)
- Dedicated to the analysis, study and dissemination of info relating to the intrusion of religion in politics.
- Separation of Church and State Home Page
- Dedicated to the U.S. constitutional provision on freedom of religion.
- Ten Commandments Defense Fund
- Defending the right to display the moral foundation of law.
- Day That Counts, The
- Encourages non-believers to contact their elected representatives on July 17, 2001.
- Theonomy & Theocracy
- A biweekly journal refuting Christian Reconstructionism, dominion theology, and theonomy.
- Baylor University - J. M. Dawson Institute of Church-State Studies
- Dedicated to the study of church-state relations and religious liberty in a university setting. Publisher of the only academic journal dedicated to church-state relations.
- About.com: Ten Commandments and the Separation of Church and State
- Article examines the history and congressional actions surrounding the display of the Ten Commandments in governmental buildings.
- Culture Wars 101
- Objective, online tour of the American culture wars over abortion, homosexuality, the separation of church and state and more. News stories are added daily.
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