- Bioperl Project, The
 - International association of developers of open source Perl tools for bioinformatics, genomics, and life science research. - BrainMaster Project, The
- Project in which people are using the Internet to co-develop and co-educate, in the development and use of personal brainwave monitors.
- COMPARE 4.6b: Phylogenetic Comparative Methods
- Computer software for the phylogenetic analysis of comparative data.
- Digital Nature Guide
- Free software that allows you to make and to view natural history guides for any type of animal or plant.
- E-CELL Project
- Develops modelling and simulation software for biochemical and genetic processes.
- Equilibrate
- PC software that calculates equilibria of molecules that physically interact with each other.
- FOLD-X
- Programme for calculating the folding pathways of proteins and for calculating the effect of a point mutation on the stability of a protein.
- Mamba
- Links across the WWW to software for biologists.
- Molecular Visualization Freeware
- Protein Explorer, Chime, and RasMol.
- Open Bioinformatics Foundation
- Aiming to provide financial, administrative, and technical assistance for various open source life science projects.
- OpenInformatics.org
- Encouraging life scientists to release their code in an Open Source model.
- OpenRasMol
- Site for users and software developers of open source versions of RasMol, a programme for molecular graphics visualisation.
- SURFdriver
- Anatomical 3D surface reconstruction software.
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